Lab Modules Lab basics and restriction digestion The Luria-Delbrück fluctuation test Intro to microscopy E. coli growth V(D)J single molecule kinetics Antibiotic resistance Tutorials Setting up a Python environment Intro to Python for scientific computing Plotting univariate data (data set) Nonlinear regression (data set) Image processing I (images) Image processing II (images) Image processing tutorial III (images 1, images 2) Maximum likelihood estimation tutorial (data) Bioinformatics tutorial: Setting up QIIME2 and running AWS Preliminary analysis of ABX resistance data Journal club papers and talking points The Great Ideas of Biology by Paul Nurse Spatiotemporal microbial evolution on antibiotic landscapes by Baym, et al. Bacterial Growth: Constant Obsession with dN/dt by Frederick Neidhardt James Shapiro's blog about the immune system Figure 1 or Figure 7? by Rob Phillips Data All data sets are available here. Miscellaneous handouts Bi 1x safety sheet NEB λ restriction sites Grant and Grant finch beak data set Bcd immunostaining data from Driever and Nüsslein-Volhard.
