Lab Modules Lab basics and restriction digestion Intro to microscopy The Luria-Delbrück fluctuation test E. coli growth Antibiotic resistance Efflux pumps Tutorials Setting up a Python environment Intro to Python for scientific computing (data set) Plotting univariate data (data set) Nonlinear regression (data set) Image processing I (images) Image processing II (images) Analysis of plate reader growth data (data set) Bioinformatics tutorial: Setting up QIIME2 and running AWS Preliminary analysis of ABX resistance data Analysis of efflux experiment data (data set) Journal club papers and talking points The Great Ideas of Biology by Paul Nurse Spatiotemporal microbial evolution on antibiotic landscapes by Baym, et al. Bacterial Growth: Constant Obsession with dN/dt by Frederick Neidhardt Monod growth paper Monod Nobel lecture Figure 1 or Figure 7? by Rob Phillips Data All data sets are available here. Miscellaneous handouts Bi 1x safety sheet NEB λ restriction sites Grant and Grant finch beak data set Bcd immunostaining data from Driever and Nüsslein-Volhard.
